Abstract: FSSP (families of structurally similar proteins) is a database of structural alignments of proteins in the Protein Data Bank. (PDB) (1). The current release. PDF | FSSP (families of structurally similar proteins) is a database of structural alignments of proteins in the Protein Data Bank (PDB). The database currently. FSSP (families of structurally similar proteins) is a database of structural alignments of proteins in the Protein Data Bank (PDB) [1]. The database currently .

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Not to be used for classified research. GTPase domains of ras p21 oncogene protein and elongation factor Tu: Journal List Nucleic Acids Res v. Skip to daatbase form Skip to main content.

FSSP database of structurally aligned protein fold families [1994]

The major new developments since last year 5 are continuous updates of the database and easy access to the data using browsers on the World Wide Web WWW. Protein structure comparison by alignment of distance matrices.

It furthers the University’s objective of excellence in research, scholarship, and education by publishing worldwide. ReddyIlya N. This page was last edited on 18 Decemberat satabase The database currently contains an extended structural family for each of representative protein chains.


For example, the original HSSP entry for 5p21 lists sequences; here, only 29 representativeras sequences are shown. You must accept the terms and conditions. The alignments are constrained to be sequential as this is biologically meaningful though not imposed by the Dali method.

Identification and classification of protein fold families. See below for dataabase parsing of FSSP entries. TaylorIosif I.

The FSSP database: fold classification based on structure-structure alignment of proteins.

As expected from the high sequence identity, the folds fsssp both of the 1AAP chains and that of 9PTI are as good as identical 1. ArthurRoland L.

By using this site, you agree to the Terms of Use and Privacy Policy. Wikivoyage 0 entries edit. National Center for Biotechnology InformationU. Selection of representative protein data sets. The FSSP database contains a fold classification based on dtabase structural alignments of known structures.

L Holm and C Sander.

The FSSP database of structurally aligned protein fold families.

Wikibooks 0 entries edit. One thousand families for the molecular biologist.

The scoring function was deliberately designed to allow inter-domain conformational flexibility; hence, positional root mean square deviations for the corresponding rigid-body superimpositions are often higher than for comparison methods dxtabase put an absolute upper limit on inter molecular positional deviations.


Database of homology-derived protein structures and the structural meaning of sequence alignment. Finding proteins in FSSP. Retrieved from ” https: Wikisource 0 entries edit. Dictionary of protein databae structure: View large Download slide. Wikiquote 0 entries edit. Holm L, Sander C. Academic redistribution of single files or of the entire database is permitted.

FSSP which contains a few or tens of proteins structurally similar to the search structure, alongside the secondary structure and solvent accessibility extracted from the 3-D coordinates of the search structure 8. For each query structure from the representative set, there is a database entry containing structure-structure alignments with its structural neighbours in the representative set and its fsdp homologs in the PDB.

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